Sometimes courses are difficult to schedule. We'd like the ability to lock a section down into a block/room and it stay there even when we clear out the other sections to regenerate the schedule. Right now, it is all or nothing. You either clear out all the existing blocks or rooms or you keep them all.
I have a similar situation. I placed those courses into the schedule and saved that as a Scheduling Scenario. When I want to try a new Generate Master Schedule, I just start with that basic scenario already in place.